PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020716-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 263aa    MW: 28393.1 Da    PI: 8.8967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020716-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-1374120354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN  +++Lr+l+P +      K++Ka+ L +++ ++k+L
  NNU_020716-RA  74 KSHSEAERRRRERINAHLSTLRKLVPCS-----DKMDKASLLAEVISHVKEL 120
                    58*************************8.....7****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.63471120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1475123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-584122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGSFSWNSNV VYGSEYSRYF DGFSPNVGFR MMGRGGSSSS SSLVLDSEKG ELVKAPARLG  60
PKAMSEAKAI AALKSHSEAE RRRRERINAH LSTLRKLVPC SDKMDKASLL AEVISHVKEL  120
KRNATEATKG SVIPMDNDEL IVEPHGDGSE GGSVLITASL CCDYRPELLA DIRQALDSLH  180
LKTVRAEIST LGSRVKNVFV MTSYEEGGVG KGNGEVCHLV SSIKQALNSV LEKASSPEFS  240
PGITLSNKRR RVSPFDHSSS SSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERRRRE
2247251KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277769.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A061GLQ34e-92A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGVIT_14s0068g01580.t012e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-39bHLH family protein